Web-based triplex search tool
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Sequence
The only supported input format at the moment is
FASTA
format. In case your sequence contains any special FASTA permitted nucleic acid codes, we suggest you read
more
about how those behave in our application.
A, C, G, T
supported
B, D, H, K, M, R, S, V, W, Y
replaced by the most suitable nucleotide
any other symbol (including U)
not supported
N, -
ignored
Custom
Predefined
From file
- Not selected -
E. Coli U00096.1
E. Coli U00096.2
Hg19 - chromosome 1
Hg19 - chromosome 2
Hg19 - chromosome 3
Hg19 - chromosome 4
Hg19 - chromosome 5
Hg19 - chromosome 6
Hg19 - chromosome 7
Hg19 - chromosome 8
Hg19 - chromosome 9
Hg19 - chromosome 10
Hg19 - chromosome 11
Hg19 - chromosome 12
Hg19 - chromosome 13
Hg19 - chromosome 14
Hg19 - chromosome 15
Hg19 - chromosome 16
Hg19 - chromosome 17
Hg19 - chromosome 18
Hg19 - chromosome 19
Hg19 - chromosome 20
Hg19 - chromosome 21
Hg19 - chromosome 22
Hg19 - chromosome X
Hg19 - chromosome Y
Please enable JavaScript to use file uploader.
Triplex type
Parallel triplex on sense strand (0)
Parallel triplex on sense strand (1)
Parallel triplex on antisense strand (2)
Parallel triplex on antisense strand (3)
Antiparallel triplex on sense strand (4)
Antiparallel triplex on sense strand (5)
Antiparallel triplex on antisense strand (6)
Antiparallel triplex on antisense strand (7)
Basic search parameters
Min. triplex loop:
Max. triplex loop:
Min. triplex length:
Max. triplex length:
Min. score threshold:
Advanced parameters
Lambda for par. types:
Lambda for antipar. types:
Mu for par. types:
Mu for antipar. types:
P-value:
Mismatch pen.:
Insertion pen.:
Iso. group change pen.:
Iso. group stay bonus:
